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    1Atomic Structure Particle in a Box

    The vibrations of a guitar string produce standing

    waves because the string is bound at both ends sothat the waveform cannot propagate along the string.

    The electron in an atom is also bound (i.e. its

    movement is restricted to a small region of space due

    to its attraction to the nucleus) and therefore itsmotion also leads to standing waves and quantization

    of energy.

    Travelling WaveStanding Wave

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    2Particle in a Box

    The so-called Particle-in-a-Box model serves to

    illustrate how the wave nature of a bound electron inan atom naturally leads to quantized energy levels.

    Consider an electron confined to move along a wire

    fixed between two rigid walls at a distance Lapart.

    0 L

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    3Particle in a Box

    A classical description of the electrons motion

    allows the electron to move back and forwards along

    the wire. The kinetic energy, E, of the electron is given

    by

    2

    2

    1muE =

    Since the electron can have any velocity, u, its

    energy, E,can take any value, even zero.

    No position along the wire is more favorable than anyother and the exact position and velocity of the

    electron can be known simultaneously.

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    4Particle in a Box

    A wavedescription of the electrons motion inside the

    one-dimensional box is analogous to the vibrations ofa fixed guitar string.

    The wavelength ofthe vibrations are

    restricted to whole

    numbers of half-

    wavelengths.

    L

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    5Particle in a Box

    Like the vibrations of a guitar string, the wavefunction

    of the electron must fit exactly inside the box and thusthe wavelength, !, of the electron is restricted.

    The length, L, of the box must be a whole number of

    half-wavelengths, i.e.

    !#

    $&

    =

    2

    'nL

    where the integer ncan be considered as a quantum

    number. Rearranging to solve for the wavelength of

    the electron gives

    n

    L2=!

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    6Particle in a Box

    To calculate the kinetic energy of the electron we

    need to know its velocity, u. This can be obtained

    from rearranging the de Broglie equation to give

    Substituting for u in the equation for the kinetic

    energy of the electron gives

    !m

    hu =

    2

    2

    2

    22

    1

    !m

    hmuE ==

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    7Particle in a Box

    Substituting for !using the earlier expression relating

    !to the box length, L, gives

    Since n is an integer, the kinetic energy of the

    electron is restricted to multiples of h2/8mL2 and istherefore quantized.

    2

    22

    2

    2

    82 mL

    hn

    m

    hE ==

    !

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    8Particle in a Box

    Energy Levels & Wave Functions for a Particle in a Box

    E

    nergy/(h2/8m

    L2

    )

    n

    n

    L2=!

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    9Particle in a Box

    The smallest value of n is 1, therefore the lowest

    energy level (ground state) is at h2/8mL2. Unlike theclassical model, the kinetic energy of the electron

    cannot be zero, i.e. the electron is never at rest.

    This lowest, irremovable energy is known as the

    zero-point energy and corresponds to a continuous

    fluctuating motion of the electron between the two

    walls of the box.

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    10Particle in a Box

    Since the energy levels are proportional to 1/mL2,

    they become more closely spaced as the box getsbigger or as the mass of the particle gets larger.

    For macroscopic particles with large relative mass,

    the levels are so closely spaced that the energy is

    effectively no longer quantized.

    E1

    E2

    E3

    E4E5

    Energy

    Small mor L Large mor L

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    11Particle in a Box

    The wavefunctions " for the particle-in-a-box model

    do not correspond to an oscillation of the wire butinstead describe the shape of the electron wave

    inside the box.

    The amplitude of the electron wave at any point along

    the wire is related to the probability of finding theelectron and is proportional to "2.

    Unlike the classical model, the probability is not

    identical everywhere and in fact can be zero at certain

    points (nodes) along the wire. The number of nodes

    is given by n 1.

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    12Particle in a Box

    Wavefunctions for the Particle-in-a-Box Model

    Wavefunction Square of Wavefunction

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    13Particle in a Box

    The particle in a box model has a number of parallels

    with the quantum model of the atom:

    1. The motion of the electron is described bystanding waves.

    2. The energy of the electron is quantized.3. The wavefunctions and energy levels are

    dependent on the integer n, analogous to the

    principal quantum number in an atom.

    4. The probability of finding the electron is related tothe square of the wavefunction and is not the

    same at all points.

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    14Absorption Spectra

    The particle in a box model can be used to rationalise

    the absorption spectra of cyanine dyes which havethe general formula

    These dyes are positively charged linear molecules

    containing conjugated double bonds. Their very

    intense colours make them useful in many

    applications including tunable lasers.

    The absorption maxima of the dyes show a strong

    correlation with the number of conjugated bonds, k.

    (CH3)2N!(!CH=CH!)k!C=N(CH3)2

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    15Absorption Spectra

    Absorption Spectra of Cyanine Dyes

    Wavelength, #/ nm

    Absorba

    nce

    k=2

    k=3

    k=4 k=5

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    16Absorption Spectra

    If the chain of conjugated double bonds are

    approximated as a wire of length, L, along which the

    $electrons are free to travel,

    2

    22

    8mL

    hnE = n= 1, 2, 3, .

    then the energy levels for the system can be

    calculated using

    (CH3)2N!CH=CH!CH=CH!CH=CH!C=N(CH3)2

    L

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    17Absorption Spectra

    The energy of the dye absorption is due to an

    electron being excited from the highest level occupied

    by the $electrons to the lowest unoccupied level.

    The energy difference between two adjacent levels

    can be calculated using

    2

    2

    18

    )12(mL

    hnEEE

    nn +=!="

    +

    For the dye absorption,n

    andn+

    1are the quantumnumbers for the highest occupied and lowestunoccupied levels, respectively.

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    18Absorption Spectra

    The quantum number nis connected with the number

    of $ electrons, N. Since each level accommodates

    two electrons, the highest occupied level has n= N/2.

    For the cyanine dyes the lone pair of electrons on the

    outer N atom are also included as $electrons due totwo possible resonance structures. Thus, N= 2k + 4

    (CH3)2N!(!CH=CH!)k!C=N(CH3)2

    (CH3)2N=C!(!CH=CH!)k!N(CH3)2

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    19Absorption Spectra

    Energy Levels for (CH3)2N-(-CH=CH-)3-CH=N(CH3)2

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    20Absorption Spectra

    The length, L, of the conjugated $ system can be

    expressed in terms of the number of $ electrons, N,and the bond length, d

    o, as L= Nd

    o

    Substituting for nand Lin the expression for %Egives

    22

    2

    8)1(

    odmN

    hNE +=!

    Using the above expression with h= 6.63 x 10-34J s,

    m= 9.11 x 10-31kg and do= 140 x 10-12m allows theexcitation energy associated with the absorption

    spectra of cyanine dyes to be calculated.

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    21Absorption Spectra

    Using the simple relations

    E

    hc

    v

    coo

    !==

    max"

    where vis the frequency and co= 3.0 x 108m/s is the

    speed of light, the wavelength of the absorptionmaxima, #max, can be calculated from

    Ehv != and!

    oc

    v =

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    22Absorption Spectra

    Calculated and Experimental Absorption Maxima #max

    of Cyanine Dyes (CH3)2N-(-CH=CH-)k-CH=N(CH3)2

    k N max/nm Colour

    of SolnCalc Expn

    0 4 206 224 Colourless1 6 332 313 Colourless

    2 8 459 416 Yellow

    3 10 587 519 Red

    4 12 716 625 Blue5 14 844 735 Green

    6 16 973 848 Colourless

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    23Absorption Spectra

    Substituting for %Ein the expression for !maxgives

    h

    cmd

    N

    N

    E

    hcooo

    22

    max

    8

    1!!"

    #$$%

    &

    +

    =

    '=(

    As the number of $electrons increases, N2/N+1 &N.

    This implies that #maxshould increase linearly with Nin agreement with the experimental data.

    nm7.641

    2

    !!"#$$

    %&

    +

    =

    N

    N

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    24Absorption Spectra

    Experimental Absorption Maxima (#max) vs

    Number of $Electrons (N) for Cyanine Dyes

    N

    2 4 6 8 10 12 14 16 18

    !max

    100

    200

    300

    400

    500

    600

    700

    800

    900

    k=0

    k=1

    k=2

    k=3

    k=4

    k=5

    k=6(CH3)2N!(!CH=CH!)k!C=N(CH3)2

    (N = 2k + 4)

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    25Molecular Orbital Model

    The molecular-orbital (MO) model is the only

    bonding model which has its foundations based onthe solution of the Schrdinger Wave Equation

    (SWE).

    Whereas atomic orbitals are solutions to the SWE in

    the atomic case, molecular-orbitals (MOs) are thesolutions in the molecular case.

    MOs result from the overlap of atomic orbitals on

    adjacent atoms. The valence electrons involved in

    bonding are no longer localised on individual atoms

    but delocalised over the entire molecule.

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    26

    The general rules which apply in using the

    molecular-orbital (MO) model are:

    Only valence orbitals need be considered whenforming MOs.

    The number of MOs which form is equal to thenumber of atomic orbitals that interact. If two orbitals interact, an in-phase (bonding)MO

    and an out-of-phase (antibonding)MO result.

    The energy of the bonding MO is lower than theenergy of the interacting orbitals while the energy

    of the antibonding MO is higher.

    General Rules

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    27

    Wavefunctions for orbitalshave the same phase in

    the region of overlap and

    therefore reinforce one

    another

    Wavefunctions for orbitals

    have opposite phase in

    the region of overlap andtherefore cancel one

    another

    General Rules

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    28

    Overlap of H 1s atomic orbitals to form bonding(in-

    phase) and antibonding(out-of-phase) MOs in H2:

    General Rules

    +

    +

    Out-of-Phase

    In-Phase

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    29

    Each MO accommodates

    at most only two electronswith opposite spin.

    General Rules

    H H

    !1s"

    !1s

    H2

    AO AOMOs

    From the Aufbau Principle, the lowest energyconfiguration (ground state) for H2 corresponds to

    both electrons in the 'bonding MO, i.e. '1s2.

    Since both electrons are

    lowered in energy relative

    to the isolated atoms, the

    H2molecule is stable.

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    30

    The MO configuration for H2- is '1s

    2 '*1s1. Since two

    electrons are lowered in energy while one is raised,

    it only has half the stability of H2. Similarly for H2+,

    with a MO configuration of '1s1, it also has only half

    the stability of H2.

    General Rules

    H H

    !1s"

    !1s

    H H

    !1s"

    !1s

    H2#

    H2+

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    31

    An indication of the bond strength in a molecule is

    given by the bond order (BO)where

    General Rules

    2

    )egantibondinof(N)ebondingof(NBO

    oo !!!

    =

    H2+ H2 He2

    + He2

    Stability stable stable stable unstableBond Energy (kJ/mol) 255 456 251 N/A

    Bond Length () 1.06 0.74 1.08 N/A

    Bond Order ! 1 ! 0

    !"

    !

    1s

    1s

    For a molecule

    to be stable, thebond order mustbe greater thanzero (BO > 0)

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    32General Rules

    Overlap of s orbitals

    results in only 'and

    '* MOs.

    Overlap of p orbitalsresults in ', '*, $

    and $* MOs.

    Overlap of d orbitals

    results in'

    ,'

    *,$,

    $*, (and (* MOs.

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    33Diatomic Molecules

    Qualitative MO diagram

    for 2nd row homonuclear

    diatomics which assumes' overlap is greater than

    $.

    !2p*

    2p2p

    !2p

    !2s*

    !2s

    2s2s

    E

    "

    2p*

    "2p

    AO AOMOs

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    34Diatomic Molecules

    MO diagrams for O2and F2

    E

    !2s*

    !2s

    2s2s

    O atom O atom

    !2p*

    2p2p

    !

    2p

    "2p*

    "2p

    !2s*

    !2s

    2s2s

    F atom F atom

    !2p*

    2p2p

    !

    2p

    "2p*

    "2p

    O2

    MOs

    F2

    MOs

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    35Diatomic Molecules

    Except for O2and F2, all other 2ndrow diatomics have

    the'

    2pand$

    2pMOs inverted due to mixing of 2s and2pzorbitals.!2p*

    2p2p

    !2p

    !2s*

    !2s

    2s2s

    E

    "2p*

    "2p

    !2p*

    2p2p

    !2p

    "2p*

    "2p

    !2s*

    !2s

    2s2s

    MOsMOs

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    36Diatomic Molecules

    Inversion of '2p and $2p MOs explains paramagnetic

    behavior of B2due to presence of unpaired electrons.!2p*

    2p2p

    !2p

    !2s*

    !2s

    2s2s

    E

    "2p*

    "2p

    !2p*

    2p2p!2p

    "2p*

    "2p

    !2s*

    !2s

    2s2s

    B2MOsB2MOs

    Unpairedelectrons

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    37Diatomic Molecules

    !2p*

    !2s*

    !2s

    "2p*

    "2p

    !2p

    !2p*

    !2s*

    !2s

    "2p*

    "2p

    !2p

    B2 C2 N2 O2 F2Bond Order 1 2 3 2 1

    Bond Energy 290 620 942 495 154 kJ/mol

    Bond Length 159 131 110 121 143

    Magnetism paramag diamag diamag paramag diamag

    MO model rationalizes bond energy, bond lengths andmagnetic properties of 2ndrow diatomics.

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    38Heteronuclear Diatomics

    In heteronuclear diatomicsthe overlapping orbitalsare at different energies. The valence orbitals on the

    more electronegative atom lie at lower energy.

    !"

    !

    More Electro-negative Atom

    Less Electro-negative Atom

    AO AOMOs

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    39Heteronuclear Diatomics

    A modified MO scheme is used to describe

    heteronuclear diatomics involving atoms with similarelectronegativities such as CO and NO.

    C atom O atom

    !"

    #"

    !

    #

    !"

    !

    2p

    2s

    2s

    2p

    CO MOsN atom O atom

    !"

    !

    2s

    2s

    NO MOs

    !"

    #"

    !

    #

    2p

    2p

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    40Heteronuclear Diatomics

    If the atoms have very different electronegativities,

    the MOs are largely localized on one or the otheratoms and the bonding becomes more ionic in

    character, e.g. HF.

    2s

    2p

    1s

    !"

    #nb

    !

    H atom F atomHF MOs

    The 2s orbital on F is so

    low in energy that only

    the 2pz orbital overlapswith the H 1s orbital to

    form 'and '* MOs.

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    41Polyatomic Molecules

    In polyatomic molecules, the MOs are built up by

    forming combinations of equivalent atomic orbitalson symmetry-related atoms known as linear

    combinations of atomic orbitals (LCAOs).

    In BeH2 the two hydrogen atoms are related by

    symmetry and therefore their 1s orbitals can becombined to form two linear combinations given by:

    "+= HA(1s) + HB(1s)

    "= HA(1s) HB(1s)

    HA HBBe

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    42Polyatomic Molecules

    LCAOs formed fromH 1s orbitals overlap

    with atomic orbitals

    on Be which have the

    same symmetry.

    Since H 1s and Be 2s

    and 2pz orbitals are

    orientated along the

    internuclear axis, only

    ' bonding and anti-

    bonding MOs result.

    Be (2s)+!+

    Be (2s)"!+

    Be (2pz)+!"

    Be (2pz)"!"

    H HBe

    #g

    #g*

    #u

    #u*

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    43Polyatomic Molecules

    The Be (2s) + " and

    Be (2pz) + "+ comb-inat ions are non-

    bonding as in-phase

    overlap is cancelled by

    out-of-phase overlap.

    The Be 2px and 2pyorbitals are non bond-

    ing as they do not

    have the co r rec tsymmetry to overlap

    with either "+or ".

    Be (2s)+ !

    "

    Be (2pz)+ !+

    Be (2px)+!"

    H HBe

    Be (2px)+ !+

    Be (2py)+ !+

    Be (2py)+!"

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    44Polyatomic Molecules

    2p

    2s

    !"

    !+

    #g

    #u

    #u*

    $unb

    #g*

    Be AOsBeH2

    MOs

    H 1s

    LCAOs

    2px,2py

    2pz